In WordPress before 4.7.3 (wp-admin/plugins.php), unintended files can be deleted by administrators using the plugin deletion functionality.
{ "binaries": [ { "binary_version": "4.4.2+dfsg-1ubuntu1", "binary_name": "wordpress" }, { "binary_version": "4.4.2+dfsg-1ubuntu1", "binary_name": "wordpress-l10n" }, { "binary_version": "4.4.2+dfsg-1ubuntu1", "binary_name": "wordpress-theme-twentyfifteen" }, { "binary_version": "4.4.2+dfsg-1ubuntu1", "binary_name": "wordpress-theme-twentyfourteen" }, { "binary_version": "4.4.2+dfsg-1ubuntu1", "binary_name": "wordpress-theme-twentysixteen" } ] }